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rheojax 0.6.1 documentation
rheojax 0.6.1 documentation

User Guide

  • User Guide: Graduate Student Learning Pathway
    • Section 1: Fundamentals (Weeks 1-2)
      • What is Rheology?
      • Material Classification
      • Test Modes in Rheology
      • Model Capabilities
      • Parameter Interpretation
    • Section 2: Model Usage (Weeks 3-6)
      • Getting Started with Model Fitting
      • Model Families Overview
      • Model Selection Guide
      • Fitting Strategies and Troubleshooting
    • Section 3: Advanced Topics (Weeks 7-12)
      • Bayesian Inference
      • Fractional Viscoelasticity: Mathematical Reference
      • Multi-Technique Fitting Guide
      • Time-Temperature Superposition (TTS)
      • Soft Glassy Rheology (SGR) Analysis
      • Sequence of Physical Processes (SPP)
      • ODE-Based Constitutive Models
      • Thixotropy and Yield Stress Analysis
      • Dense Suspensions and Glassy Materials
      • Transient Polymer Network Models (TNT + VLB)
      • Vitrimer and Nanocomposite Models
      • Complete Guide to Data Transforms
    • Section 4: Practical Guides (Weeks 13-16)
      • Pipeline API Tutorial
      • Modular API Tutorial
      • Model Inventory System
      • Data Format Reference
      • TA Instruments TRIOS Format
      • Data I/O Guide
      • Visualization Guide
      • Batch Processing
    • Section 5: Appendices
      • Experimental Design Guidelines
      • Material Property Database
      • Troubleshooting Guide
      • Glossary of Rheological Terms
    • GUI Reference Guide
      • Getting Started
      • Data Loading
      • Model Fitting
      • Bayesian Inference
      • Diagnostics
      • Transforms
      • Exporting
      • Menu Reference
      • Keyboard Shortcuts

API Reference

  • API Reference
    • Core Module (rheojax.core)
    • Models API
    • SPP Analysis API
    • Transforms API
    • Pipeline API
    • I/O Module (rheojax.io)
    • Utilities (rheojax.utils)
    • Logging (rheojax.logging)
    • Visualization (rheojax.visualization)

Handbooks

  • Models Handbook
    • Models Summary & Selection Guide
    • Classical Viscoelastic Models
      • Maxwell (Classical)
      • Zener (Standard Linear Solid)
      • SpringPot (Scott-Blair Element)
    • Fractional Viscoelastic Models
      • Fractional Maxwell Gel (Fractional)
      • Fractional Maxwell Liquid (Fractional)
      • Generalized Fractional Maxwell (Two-Order)
      • Fractional Kelvin-Voigt (Fractional)
      • Fractional Kelvin-Voigt-Zener (Fractional)
      • Fractional Zener Solid-Solid (Fractional)
      • Fractional Zener Solid-Liquid (Fractional)
      • Fractional Zener Liquid-Liquid (Fractional)
      • Fractional Jeffreys Model (Fractional)
      • Fractional Burgers Model (Fractional)
      • Fractional Poynting-Thomson (Fractional)
    • Generalized Maxwell Model (Multi-Mode)
    • Giesekus Nonlinear Viscoelastic Models
      • Giesekus Model — Handbook
    • Flow Curve Models
      • Power-Law (Ostwald–de Waele)
      • Bingham Plastic
      • Carreau Model
      • Carreau–Yasuda Model
      • Cross Model
      • Herschel-Bulkley Model
    • Isotropic-Kinematic Hardening (IKH) Models
      • Maxwell-Isotropic-Kinematic Hardening (MIKH)
      • Multi-Lambda Isotropic-Kinematic Hardening (ML-IKH)
    • Fractional IKH (FIKH) Models
      • Fractional Isotropic-Kinematic Hardening (FIKH)
      • Fractional Multi-Lambda IKH (FMLIKH)
    • DMT Thixotropic Models
      • DMT Thixotropic Models
    • Fluidity Models
      • Fluidity Local (Homogeneous Fluidity Model) — Handbook
      • Fluidity Nonlocal (Coussot-Ovarlez Cooperative Model) — Handbook
      • Fluidity-Saramito EVP Model
      • Fluidity Model Identifiability
    • Hébraud-Lequeux (HL) Models
      • Hébraud–Lequeux (HL) Model — Handbook
    • Shear Transformation Zone (STZ) Models
      • Shear Transformation Zone (STZ)
    • Elasto-Plastic Models (EPM)
      • Elasto-Plastic Models (EPM)
      • JAX Implementation Utilities
      • Advanced Physics
      • Tensorial Elasto-Plastic Model (EPM)
      • Bayesian Inference for Tensorial EPM
      • Advanced Normal Stress Physics
      • Anisotropic Yielding: Hill Criterion Details
      • Enhanced Experimental Protocols
    • Soft Glassy Rheology (SGR) Models
      • SGR Conventional (Soft Glassy Rheology) — Handbook
      • SGR GENERIC (Thermodynamically Consistent)
    • ITT-MCT Models
      • ITT-MCT Schematic (F_1_2)
      • ITT-MCT Isotropic (ISM)
      • ITT-MCT Protocol Equations
    • Transient Network Theory (TNT)
      • TNT Protocol Equations — Shared Reference
      • TNT Knowledge Extraction Guide
      • TNT Tanaka-Edwards (Basic Transient Network) — Handbook
      • TNT Bell (Force-Dependent Breakage) — Handbook
      • TNT FENE-P (Finite Extensibility) — Handbook
      • TNT Non-Affine (Gordon-Schowalter) — Handbook
      • TNT Stretch-Creation (Enhanced Reformation) — Handbook
      • TNT Loop-Bridge (Two-Species Kinetics) — Handbook
      • TNT Sticky Rouse (Multi-Mode Sticker Dynamics) — Handbook
      • TNT Cates (Living Polymers / Wormlike Micelles) — Handbook
      • TNT Multi-Species (Multiple Bond Types) — Handbook
    • VLB Transient Network Models
      • VLB Transient Network Models
      • VLBVariant — Bell, FENE-P & Temperature
      • VLBNonlocal — Shear Banding PDE
      • VLB Protocol Equations & Derivations
      • VLB — What You Can Learn
      • VLB Advanced Theory & Numerical Methods
    • HVM (Hybrid Vitrimer Model)
      • HVM Model Reference
      • HVM Protocol Equations & Derivations
      • HVM Advanced Theory & Numerical Methods
      • HVM Knowledge Extraction Guide
    • HVNM (Hybrid Vitrimer Nanocomposite Model)
      • HVNMLocal — Full Model Reference
      • HVNM Protocol Equations & Derivations
      • HVNM Advanced Theory & Numerical Methods
      • HVNM Knowledge Extraction Guide
    • DMTA / DMA Analysis
      • DMTA Theory & Conversion
      • DMTA Model Selection & Applicability
      • Numerical Implementation
      • DMTA Workflows
      • DMTA Measurement Protocols
      • Knowledge Extraction from DMTA Data
      • Future Extensions
    • Sequence of Physical Processes (SPP) Models
      • SPP Decomposer (Sequence of Physical Processes)
      • SPP Yield Stress Model
  • Transforms
    • Transforms Summary & Workflow Guide
    • FFTAnalysis
    • Mastercurve (Time-Temperature Superposition)
    • MutationNumber
    • OWChirp
    • SmoothDerivative
    • Sequence of Physical Processes (SPP) Transform
    • Strain-Rate Frequency Superposition (SRFS)
    • PronyConversion
    • SpectrumInversion
    • LVEEnvelope
    • CoxMerz

Tutorial Notebooks

  • Tutorial Notebooks

Model Verification

  • Model Verification Reports

Developer Documentation

  • Architecture Overview
  • Contributing to RheoJAX

Additional Resources

  • Installation
  • Quickstart Guide
  • Development Status & Performance
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